Archive | November, 2009

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The (Visually) Coolest Scientific Journal: JoVE

Posted on 30 November 2009 by admin

jove zebrafish danio rerio article for journal of visualized experiments

JoVE stands for “Journal of Visualized Experiments”, and basically that is exactly what it delivers. JoVE is a new concept that tries to marry scientific reporting with video. Think of a typical journal article describing a protocol or experiment, and now imagine you can actually see the researcher perform the experiments on video. This is the format JoVE uses to report scientific research, and since it is also indexed in PubMed, the content really does go beyond your short little YouTube video. The concept also remains true to the layout of a typical research article, including an abstract, an introduction, and a conclusion. However, video articles on JoVE spend a lot of time on the actual experimental protocol, which is a huge benefit in relatively novel fields, such as in the use of zebrafish, or when learning to use new technology.

JoVE publishes articles in a number of different categories, focusing on the life sciences:

  • Medicine
  • Neuroscience
  • Developmental Biology
  • Cellular Biology
  • Plant Biology
  • Microbiology
  • Immunology
  • Basic Protocols

Zebrafish fit in all but one of those categories, so there are tons of opportunities to learn about the different types of zebrafish research being done. Best of all, because it is a video based journal, and zebrafish research is relatively new, the opportunity to learn new protocols is also pretty good. When it comes to the Materials and Methods section of a traditional journal, I can rarely say I find it particularly entertaining and most of the time not even really that interesting. However, seeing the experiment being performed on video makes it not only educational, informative, but also particularly entertaining.

JoVE subscription vs free content

The production costs associated with each of the research articles published in JoVE is understandably much higher than in traditional paper publishing. This cost has to be offset somehow, and researchers wanting to publish in JoVE are met with relatively high publishing costs. Aside from this, a lot of the content is only available to viewers who have a membership (which is actually very reasonably priced). The paid content is easily recognized, because you’re met with a video that is locked:

jove zebrafish danio rerio article for journal of visualized experiments2There is quite a bit of content that is open access though, where you can see the complete video journal article for free. Why are some videos not locked? Simple, the authors paid more money to make them open access! Personally, I really appreciate this and I’ve already found a number of very interesting open access zebrafish research articles on JoVE:

I really believe this new concept in scientific research reporting is an amazing way of staying on top of the latest (zebrafish) research. What do you think? I’d love to hear your comments!

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Article Alert: How to Build a Low-Cost Zebrafish (Danio rerio) Facility

Posted on 13 November 2009 by admin

The journal “Zebrafish” has published an interested how-to article with very practical applications for researchers getting their feet wet using zebrafish as a model organism. The article is titled “Modular, Easy-To-Assemble, Low-Cost Zebrafish Facility”, by Kim et al. (Zebrafish. 2009 September; 6(3): 269–274).

TheThe PubMed entry for this article includes the following abstract from the authors:

“We have constructed a standalone, modular, low-cost water recirculation zebrafish facility in our laboratory. This is easy to maintain and will take only approximately $500 and a half a day to build an 80-tank module. The system described here will be useful to even investigators who are new to zebrafish aquaculture.”

Having worked in a zebrafish facility that started out with, literally, 20 fish or so, I’m excited this article was published. Researchers who want to built their own zebrafish facility shouldn’t have to reinvent the wheel.

Find the article directly from the publisher here. Or through pubmed: PMID 19694524

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